Prospective Evaluation of High Resolution Dual Energy Computed Tomographic Imaging, Noninvasive (Liquid) Biopsies, and Minimally Invasive Surgical Surveillance for Early Detection of Mesotheliomas in Patients With BAP1 Tumor Predisposition Syndrome
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ClinicalTrials.gov Identifier: NCT04431024 |
Recruitment Status :
Recruiting
First Posted : June 16, 2020
Last Update Posted : March 9, 2023
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Background:
A germline mutation is a change to a person s genes that is carried through their DNA. These mutations can be passed on from parents to their offspring. Germline mutations in a gene called BAP1 are linked to the development of mesothelioma and other cancers. Researchers want to follow people with these mutations to learn more.
Objective:
To see if researchers can improve how people who have or are suspected to have a BAP1 mutation are monitored over time.
Eligibility:
People age 30 and older who are suspected to have a BAP1 germline mutation.
Design:
Participants will be screened with a personal and family medical history. Their medical records may be reviewed. They will give a blood or saliva sample to test for a BAP1 mutation. They will get genetic counseling.
To take part in this study, participants will enroll on 2 to 3 other protocols.
Participants will have a physical exam. They may have a tumor biopsy. They will give blood and urine samples. They will have skin and eye exams.
Some participants will have video-assisted thoracoscopy to examine the chest and lungs and diagnose suspicious areas. For this, a small camera is inserted into the chest through a small incision.
Some participants will have laparoscopy to examine the organs inside the abdomen. For this, a small camera is inserted into the abdomen through a small incision.
Participants will have imaging scans of the chest, abdomen, and pelvis. They may have brain scans.
Participants will visit the NIH once a year for follow-up exams.
Participation lasts indefinitely.
Condition or disease |
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Familial Cancer BRCA1-Associated Protein-1 (BAP1) Mutations Tumor Predisposition Syndrome (TPDS) Mesothelioma |
Background:
- Mutations involving BRCA1-Associated Protein-1 (BAP1), a nuclear deubiquitinase involved in epigenetic regulation of gene expression, DNA repair, and cellular energetics, have emerged as one of the most common somatic mutations in malignant mesotheliomas.
- Germline mutations involving BAP1 predispose individuals to mesothelioma as well as a variety of other malignancies including melanoma and lung, renal, gastric, breast, and biliary tract cancers.
- The cancer penetrance of germline BAP1 mutations is nearly 100%, with most patients developing multiple neoplasms.
- Presently there are no established guidelines for surveillance of cancer patients with germline BAP1 mutations or of cancer-free individuals with germline BAP1 mutations.
Objectives:
To prospectively gather information related to the use of dual energy computed tomographic imaging (DECT), together with minimally invasive surgical surveillance for early detection of pleural or peritoneal mesothelioma in patients with BAP1 tumor predisposition syndrome (TPDS)
Eligibility:
- Individuals with a history of any malignancy with known or suspected germline mutation involving BAP1.
- First- or second-degree relatives of patients with documented germline BAP1 mutations, who are also found to carry similar germline mutations.
- Age greater than or equal to 30
Design:
- Individuals with suspected hereditary tumor predisposition syndromes will undergo germline evaluation using CLIA-certified next-gen sequencing (NGS).
- First- and second-degree relatives of patients with germline BAP1 mutations will be offered similar NGS evaluation.
- Subjects with germline mutations in BAP1, will undergo periodic dual energy CT (DECT) scans of the chest, abdomen, and pelvis. Plasma cell-free DNA (cfDNA) will be assessed at similar intervals, and minimally invasive surveillance procedures (i.e., video- assisted thoracoscopy and laparoscopy) will be performed periodically to detect early, subclinical malignancies that may be amenable to potentially curative local interventions.
Study Type : | Observational |
Estimated Enrollment : | 800 participants |
Observational Model: | Case-Only |
Time Perspective: | Prospective |
Official Title: | Prospective Evaluation of High Resolution Dual Energy Computed Tomographic Imaging, Noninvasive (Liquid) Biopsies, and Minimally Invasive Surgical Surveillance for Early Detection of Mesotheliomas in Patients With BAP1 Tumor Predisposition Syndrome |
Actual Study Start Date : | March 30, 2021 |
Estimated Primary Completion Date : | June 30, 2038 |
Estimated Study Completion Date : | June 30, 2038 |

Group/Cohort |
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Cancer patients
Individuals with history of cancer and detected or suspected germline mutation in BAP1 TPDS
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Relatives of cancer patients
First- or second-degree relatives of a cancer patient (with or without cancer) with documented BAP1 tumor predisposition syndrome (TPDS)
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- Prospectively gather information related to the use of dual energy computed tomographic imaging (DECT) together with minimally invasive surveillance for early detection of mesotheliomas in patients with BAP1 TPDS [ Time Frame: annual or biennial follow-up, 5 years interim analysis ]Documentation of the counts, incidence, and frequencies of cancers from dual energy computed tomographic imaging and minimally invasive surveillance results will be analyzed for statistical analysis for the early detection of mesotheliomas in patients with BAP1 TPDS.
- To characterize the epigenetic features of mesotheliomas associated with germline mutations in BAP1 [ Time Frame: at clinical visits, annual or bi-annual follow-up ]Characterization of the epigenetic features of mesotheliomas associated with germline mutations in BAP1.
- To investigate the biological mechanisms associated with prolonged survival in participants with mesothelioma that carry germline BAP1 mutations [ Time Frame: once during follow-up per participant agreement ]Tumor tissue, blood, saliva, or buccal swab specimen for genetic analyses including WES, FACS, Western blots, and RNA sequencing.

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Ages Eligible for Study: | 30 Years and older (Adult, Older Adult) |
Sexes Eligible for Study: | All |
Accepts Healthy Volunteers: | Yes |
Sampling Method: | Non-Probability Sample |
- ELIGIBILITY CRITERIA:
Inclusion Criteria for Genetic Testing
-Eligible individuals include:
--Individuals with a history of any malignancy with known or suspected germline mutations involving BAP1
OR
--First- or second-degree relatives of patients (with or without cancer) with documented BAP1 tumor predisposition syndrome (TPDS).
- Age greater than or equal to 30 years.
- All participants must understand and be willing to sign a written informed consent document.
Inclusion Criteria for Surveillance
-Eligible individuals include those who completed step 1 genetic testing with study-confirmed BAP1 or other germline
TPDS mutation.
-Completed co-enrollment on protocol 06C0014, "Prospective Evaluation of Genetic and Epigenetic Alterations in Patients with Thoracic Malignancies."

To learn more about this study, you or your doctor may contact the study research staff using the contact information provided by the sponsor.
Please refer to this study by its ClinicalTrials.gov identifier (NCT number): NCT04431024
Contact: Lydiah Mutumbi | (240) 858-7562 | lydiah.mutumbi@nih.gov | |
Contact: David S Schrump, M.D. | (240) 760-6239 | david_schrump@nih.gov |
United States, Maryland | |
National Institutes of Health Clinical Center | Recruiting |
Bethesda, Maryland, United States, 20892 | |
Contact: For more information at the NIH Clinical Center contact National Cancer Institute Referral Office 888-624-1937 |
Principal Investigator: | David S Schrump, M.D. | National Cancer Institute (NCI) |
Responsible Party: | National Cancer Institute (NCI) |
ClinicalTrials.gov Identifier: | NCT04431024 |
Other Study ID Numbers: |
200106 20-C-0106 |
First Posted: | June 16, 2020 Key Record Dates |
Last Update Posted: | March 9, 2023 |
Last Verified: | March 6, 2023 |
Individual Participant Data (IPD) Sharing Statement: | |
Plan to Share IPD: | Yes |
Plan Description: | .All IPD recorded in the medical record will be shared with intramural investigators upon request. @@@@@@In addition, all large scale genomic sequencing data will be shared with subscribers to dbGaP. |
Supporting Materials: |
Study Protocol Statistical Analysis Plan (SAP) Informed Consent Form (ICF) |
Time Frame: | Clinical data available during the study and indefinitely.@@@@@@Genomic data are available once genomic data are uploaded per protocol GDS plan for as long as database is active. |
Access Criteria: | Clinical data will be made available via subscription to BTRIS and with the permission of the study PI. @@@@@@Genomic data are made available via dbGaP through requests to the data custodians. |
Studies a U.S. FDA-regulated Drug Product: | No |
Studies a U.S. FDA-regulated Device Product: | No |
Germline Mutation in the BAP1 Gene BRCA1-Associated Protein-1 Genetics |
Familial Background Natural History DECT |
Mesothelioma Mesothelioma, Malignant Syndrome Disease Susceptibility Disease Pathologic Processes Adenoma Neoplasms, Glandular and Epithelial Neoplasms by Histologic Type Neoplasms |
Neoplasms, Mesothelial Lung Neoplasms Respiratory Tract Neoplasms Thoracic Neoplasms Neoplasms by Site Pleural Neoplasms Lung Diseases Respiratory Tract Diseases Disease Attributes |