Study of SQZ-eAPC-HPV in Patients With HPV16+ Recurrent, Locally Advanced or Metastatic Solid Tumors
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ClinicalTrials.gov Identifier: NCT05357898 |
Recruitment Status :
Recruiting
First Posted : May 3, 2022
Last Update Posted : May 26, 2023
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Condition or disease | Intervention/treatment | Phase |
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Adult Solid Tumor | Biological: SQZ-eAPC-HPV Biological: Pembrolizumab | Phase 1 Phase 2 |
Study Type : | Interventional (Clinical Trial) |
Estimated Enrollment : | 60 participants |
Allocation: | Non-Randomized |
Intervention Model: | Sequential Assignment |
Masking: | None (Open Label) |
Primary Purpose: | Treatment |
Official Title: | A Phase 1/2, First-in-Human, Multicenter, Open-Label Study of SQZ-eAPC-HPV as Monotherapy and in Combination With Immune Checkpoint Inhibitor(s) in Patients With HPV16+ Recurrent, Locally Advanced, or Metastatic Solid Tumors |
Actual Study Start Date : | March 24, 2022 |
Estimated Primary Completion Date : | March 24, 2024 |
Estimated Study Completion Date : | March 24, 2024 |

Arm | Intervention/treatment |
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Experimental: Part 1A Monotherapy Dose Escalation Phase
In Part 1A, SQZ-eAPC-HPV as a monotherapy is administered every 3 weeks for up to a year. There are 3 groups ("Cohorts") in this Phase as follows:
Additional provisional cohorts may be opened prior to starting Part 1B. |
Biological: SQZ-eAPC-HPV
Enhanced antigen presenting cells (eAPC) cell therapy; therapeutic vaccine engineered from autologous peripheral blood mononuclear cells (PBMCs) by incorporating 5 mRNAs. |
Experimental: Part 1B Combination Phase
In Part 1B, SQZ-eAPC-HPV is administered in combination with immune checkpoint inhibitor pembrolizumab. SQZ-eAPC-HPV will be administered on Day 1 of Cycle 1 and 200 mg of pembrolizumab will be administered on Day 8 of Cycle 1. In future cycles, patients will be first administered SQZ-eAPC-HPV and then pembrolizumab on the first day of each cycle, every 3 weeks for a maximum of 1 year for SQZ-eAPC-HPV, and 2 years for pembrolizumab.
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Biological: SQZ-eAPC-HPV
Enhanced antigen presenting cells (eAPC) cell therapy; therapeutic vaccine engineered from autologous peripheral blood mononuclear cells (PBMCs) by incorporating 5 mRNAs. Biological: Pembrolizumab programmed cell death 1 (PD-1) blocking antibody |
Experimental: Part 2 Lead-in Combination Phase
In Part 2, SQZ-eAPC-HPV will be administered on Day 1 of each treatment cycle. Treatment with 200 mg of pembrolizumab will begin in Cycle 3. Starting at Cycle 3, patients will be administered SQZ-eAPC-HPV and then pembrolizumab every 3 weeks for a maximum of 1 year for SQZ-eAPC-HPV, and 2 years for pembrolizumab.
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Biological: SQZ-eAPC-HPV
Enhanced antigen presenting cells (eAPC) cell therapy; therapeutic vaccine engineered from autologous peripheral blood mononuclear cells (PBMCs) by incorporating 5 mRNAs. Biological: Pembrolizumab programmed cell death 1 (PD-1) blocking antibody |
- Number of participants with treatment-emergent adverse events (TEAEs; all, related, serious, and of special interest) as assessed by CTCAE version 5.0 [ Time Frame: Through 6 weeks after the patient's last dose of investigational product ]For SQZ-eAPC-HPV as a monotherapy, in combination with pembrolizumab, and as a monotherapy lead-in with pembrolizumab (Part 1A, Part 1B, and Part 2, respectively).
- Number of participants with dose-limiting toxicity (DLT) [ Time Frame: Through Day 28 ]For SQZ-eAPC-HPV as a monotherapy (Part 1A).
- Number of participants with dose-limiting toxicity (DLT) [ Time Frame: Through Day 42 ]For SQZ-eAPC-HPV in combination with pembrolizumab (Part 1B).
- Objective response rate (ORR) [ Time Frame: Through progression per RECIST v1.1 or start of new anticancer therapy, up to 2 years after first dose of investigational product ]Proportion of patients with best response of complete response [CR] and/or partial response [PR] as defined by RECIST v1.1 criteria. For SQZ-eAPC-HPV as a monotherapy, in combination with pembrolizumab, and as a monotherapy lead-in with pembrolizumab (Part 1A, Part 1B, and Part 2, respectively).
- Best overall response (BoR) [ Time Frame: Through start of a new anticancer therapy, up to 2 years after the first dose of investigational product ]Evaluation of the BoR defined as CR, PR, Stable Disease [SD], Progressive Disease [PD] or Not Evaluable [NE] as defined by RECIST v1.1 criteria. For SQZ-eAPC-HPV as a monotherapy, in combination with pembrolizumab, and as a monotherapy lead-in with pembrolizumab (Part 1A, Part 1B, and Part 2, respectively).
- Progression-free survival (PFS) [ Time Frame: Through progression per RECIST v1.1 or start of new anticancer therapy, up to 2 years after first dose of investigational product ]Defined as the time from first dose of study treatment to first overall response of PD by RECIST v 1.1 or to death by any cause. This will be censored at the last RECIST v1.1 assessment if PD/death is not observed. For SQZ-eAPC-HPV as a monotherapy, in combination with pembrolizumab, and as a monotherapy lead-in with pembrolizumab (Part 1A, Part 1B, and Part 2, respectively).
- Duration of Response (DoR) [ Time Frame: Through progression per RECIST v1.1 or start of new anticancer therapy, up to 2 years after first dose of investigational product ]Defined as the time from overall response of CR or PR to first overall response of PD by RECIST v1.1 or to death by any cause. This is defined only for patients who have a CR or PR and will be censored at the last RECIST v1.1 assessment if PD/Death is not observed. For SQZ-eAPC-HPV as a monotherapy, in combination with pembrolizumab, and as a monotherapy lead-in with pembrolizumab (Part 1A, Part 1B, and Part 2, respectively).
- Disease-control rate (DCR) [ Time Frame: Through progression per RECIST v1.1 or start of new anticancer therapy, up to 2 years after first dose of investigational product ]Proportion of patients with best response of CR or PR or SD as defined by RECIST v1.1 criteria. For SQZ-eAPC-HPV as a monotherapy, in combination with pembrolizumab, and as a monotherapy lead-in with pembrolizumab (Part 1A, Part 1B, and Part 2, respectively).
- Overall survival (OS) [ Time Frame: Through study completion, up to 2 years ]Defined as the time from first dose of study treatment to death by any cause. This will be censored at the last date patient is known to be alive if death is not observed. For SQZ-eAPC-HPV as a monotherapy, in combination with pembrolizumab, and as a monotherapy lead-in with pembrolizumab (Part 1A, Part 1B, and Part 2, respectively).
- Amount of investigational product (IP) from individual patient blood collection - batch yield [ Time Frame: From leukapheresis through manufacture, a maximum of 28 days ]To determine manufacturing feasibility as assessed by batch yield (number of manufacturing runs)
- Amount of investigational product (IP) from individual patient blood collection - product failures [ Time Frame: From leukapheresis through manufacture, a maximum of 28 days ]To determine manufacturing feasibility as assessed by number of product failures

Choosing to participate in a study is an important personal decision. Talk with your doctor and family members or friends about deciding to join a study. To learn more about this study, you or your doctor may contact the study research staff using the contacts provided below. For general information, Learn About Clinical Studies.
Ages Eligible for Study: | 18 Years and older (Adult, Older Adult) |
Sexes Eligible for Study: | All |
Accepts Healthy Volunteers: | No |
Inclusion Criteria - All Patients:
- Male or female patients ≥18 years of age
- Histologically confirmed incurable or metastatic solid tumors that are HPV16+ (performed during screening locally or centrally, or based on documented historic test results)
- Eastern Cooperative Oncology Group (ECOG) performance status (PS) of 0 to 1
- At least 1 measurable lesion according to RECIST 1.1
- Must have a lesion that can be biopsied with acceptable clinical risk and agree to have a fresh biopsy at Screening and on Cycle 2 Day 8 (+/- 2 days)
- Patients must agree to venous access for leukapheresis and be willing to have a central line inserted if venous access is an issue
- Adequate organ function and bone marrow reserve performed within 14 days prior to leukapheresis
Inclusion Criteria - Part 2:
• Patients must not have been treated with immune check-point inhibitors
Exclusion Criteria - All Patients:
- Treatment with anticancer therapy, including investigational therapy, within 2 weeks prior to leukapheresis.
- Systemic treatment with either corticosteroids (>10 mg of prednisone or the equivalent per day) or other immunosuppressive medications within 14 days prior to leukapheresis
- Patients treated with non-corticosteroid based immunosuppressive agents within the last 6 months prior to leukapheresis
- Patients with active, known, or suspected autoimmune disease may not be eligible and should be discussed with the Sponsor
- Patients with >Grade 1 AEs related to previous treatment with anticancer or investigational therapy that do not resolve at least 2 weeks prior to leukapheresis, except Grade 2 neuropathy, ototoxicity, mucositis, fatigue, alopecia, or endocrine disorders managed with hormone replacement
- Known HIV infection, active hepatitis B or hepatitis C, or active mycobacterium tuberculosis infection
- Has known active central nervous system metastases
- Have active interstitial lung disease and any history of myocarditis
- Major surgery within 2 weeks of leukapheresis
Exclusion Criteria - Part 1B:
- Known hypersensitivity to pembrolizumab
- History of any Grade 3 immune-related AE (irAE) from prior immunotherapy
Exclusion Criteria - Part 2:
• Prior treatment with an immune check-point inhibitor

To learn more about this study, you or your doctor may contact the study research staff using the contact information provided by the sponsor.
Please refer to this study by its ClinicalTrials.gov identifier (NCT number): NCT05357898
Contact: Marshelle Smith Warren, MD | 857-760-0919 | patientadvocacy@sqzbiotech.com |
United States, Arizona | |
Honor Health Research Institute | Recruiting |
Scottsdale, Arizona, United States, 85258 | |
Contact: Clinical Trials clinicaltrials@honorhealth.com | |
Principal Investigator: Michael Gordon, MD | |
United States, California | |
City of Hope Medical Center | Recruiting |
Duarte, California, United States, 91010 | |
Contact: Victoria M Villaflor, MD 877-467-3411 vvillaflor@coh.org | |
Principal Investigator: Victoria M Villaflor, MD | |
United States, Colorado | |
University of Colorado Anschutz Cancer Pavillion | Recruiting |
Aurora, Colorado, United States, 80045 | |
Contact: Ana Nguyen 720-848-4394 ana.nguyen@cuanschutz.edu | |
Principal Investigator: Antonio Jimeno, MD, PhD | |
United States, Massachusetts | |
Massachusetts General Hospital | Recruiting |
Boston, Massachusetts, United States, 02114 | |
Principal Investigator: Jong Chul Park, MD | |
United States, Minnesota | |
Masonic Cancer Center, University of Minnesota | Recruiting |
Minneapolis, Minnesota, United States, 55455 | |
Contact: Cancer Information Nurse Line ccinfo@umn.edu | |
Principal Investigator: Naomi Fujioka, MD | |
United States, Nebraska | |
University of Nebraska Medical Center | Recruiting |
Omaha, Nebraska, United States, 68198-6840 | |
Contact: Pamela Nielsen pnielsen@nebraskamed.com | |
Principal Investigator: Kerry Rodabaugh, MD | |
United States, Ohio | |
University of Cincinnati Medical Center | Recruiting |
Cincinnati, Ohio, United States, 45267 | |
Principal Investigator: Trisha Wise-Draper, MD | |
United States, Tennessee | |
Tennessee Oncology, PLLC | Recruiting |
Nashville, Tennessee, United States, 37203 | |
Contact: Sarah Cannon asksarah@sarahcannon.com | |
Principal Investigator: Meredith Sellers Pelster, MD | |
Vanderbilt University Medical Center | Recruiting |
Nashville, Tennessee, United States, 37212 | |
Contact: Clinical Trials Information Program 800-811-8480 CTIP@VUMC.ORG | |
Principal Investigator: Wade Thomas Iams, MD |
Responsible Party: | SQZ Biotechnologies |
ClinicalTrials.gov Identifier: | NCT05357898 |
Other Study ID Numbers: |
COMMANDER-001 |
First Posted: | May 3, 2022 Key Record Dates |
Last Update Posted: | May 26, 2023 |
Last Verified: | May 2023 |
Studies a U.S. FDA-regulated Drug Product: | Yes |
Studies a U.S. FDA-regulated Device Product: | No |
recurrent cancer metastatic locally advanced cancer head and neck cancer cervical anal vulvar penile SQZ-eAPC-HPV HPV16 |
human papillomavirus 16 eAPC enhanced antigen presenting cells cell therapy pembrolizumab checkpoint inhibitors immunotherapy solid tumor therapeutic vaccine advanced solid tumor throat cancer |
Neoplasms Pembrolizumab Antineoplastic Agents, Immunological |
Antineoplastic Agents Immune Checkpoint Inhibitors Molecular Mechanisms of Pharmacological Action |