Omics-based Predictors of NAFLD/Potential NASH
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ClinicalTrials.gov Identifier: NCT05301231 |
Recruitment Status :
Not yet recruiting
First Posted : March 29, 2022
Last Update Posted : June 3, 2022
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Condition or disease | Intervention/treatment |
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Non-Alcoholic Fatty Liver Disease Non Alcoholic Steatohepatitis | Diagnostic Test: Genomics (DNA Extraction) Diagnostic Test: Epi-genomics Diagnostic Test: Proteomics (Glycoproteomics) Diagnostic Test: Salivary Metabolomics Behavioral: Individualized counselling for behavioural modification |

Study Type : | Observational [Patient Registry] |
Estimated Enrollment : | 450 participants |
Observational Model: | Case-Control |
Time Perspective: | Cross-Sectional |
Target Follow-Up Duration: | 3 Months |
Official Title: | Omics-based Predictors of NAFLD/Potential NASH: A New Era Towards Valid and Reliable Non-invasive Diagnosis and Personalized Therapy |
Estimated Study Start Date : | August 1, 2022 |
Estimated Primary Completion Date : | December 30, 2023 |
Estimated Study Completion Date : | April 30, 2024 |

Group/Cohort | Intervention/treatment |
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NAFLD group without fibrosis
Group diagnosed to have NAFLD without fibrosis according to the recommendation of EASL; AASLD (13) and ESPGHAN Hepatology Committee (14), (75 adults aged 30-60 years, 75 children aged 12-18 years) ,
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Diagnostic Test: Genomics (DNA Extraction)
Blood samples for detection of: Genes for Dyslipidemia BY WES and NGS (4 GWA) (30 cases) Genes polymorphism for NAFLD/NASH BY TaqMan SNP Genotyping Assay on 10 GWAS Diagnostic Test: Epi-genomics
Diagnostic Test: Proteomics (Glycoproteomics) blood samples for Identifying glycosylation pattern of five glycoproteins linked with NAFLD/NASH (transferrin, apoC III, haptoglobin, Mac2 binding protein, IgG) Diagnostic Test: Salivary Metabolomics Salivary Samples for detecting Salivary Metabolomics
Behavioral: Individualized counselling for behavioural modification Individualized counselling for behavioral modification (3 sessions): Nutritional education, Promotion of physical activities and Cognitive & Psychological support |
NAFLD group with fibrosis (potential NASH)
Group diagnosed to have NAFLD with fibrosis according to the recommendation of EASL; AASLD (13) and ESPGHAN Hepatology Committee (14), (75 adults aged 30-60 years, 75 children aged 12-18 years),
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Diagnostic Test: Genomics (DNA Extraction)
Blood samples for detection of: Genes for Dyslipidemia BY WES and NGS (4 GWA) (30 cases) Genes polymorphism for NAFLD/NASH BY TaqMan SNP Genotyping Assay on 10 GWAS Diagnostic Test: Epi-genomics
Diagnostic Test: Proteomics (Glycoproteomics) blood samples for Identifying glycosylation pattern of five glycoproteins linked with NAFLD/NASH (transferrin, apoC III, haptoglobin, Mac2 binding protein, IgG) Diagnostic Test: Salivary Metabolomics Salivary Samples for detecting Salivary Metabolomics
Behavioral: Individualized counselling for behavioural modification Individualized counselling for behavioral modification (3 sessions): Nutritional education, Promotion of physical activities and Cognitive & Psychological support |
Healthy group
Healthy control group age and sex-matched with the previous group (75 adults aged 30-60 years, 75 children aged 12-18 years),
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Diagnostic Test: Genomics (DNA Extraction)
Blood samples for detection of: Genes for Dyslipidemia BY WES and NGS (4 GWA) (30 cases) Genes polymorphism for NAFLD/NASH BY TaqMan SNP Genotyping Assay on 10 GWAS Diagnostic Test: Epi-genomics
Diagnostic Test: Proteomics (Glycoproteomics) blood samples for Identifying glycosylation pattern of five glycoproteins linked with NAFLD/NASH (transferrin, apoC III, haptoglobin, Mac2 binding protein, IgG) Diagnostic Test: Salivary Metabolomics Salivary Samples for detecting Salivary Metabolomics
Behavioral: Individualized counselling for behavioural modification Individualized counselling for behavioral modification (3 sessions): Nutritional education, Promotion of physical activities and Cognitive & Psychological support |
- Dyslipidemia-related variants related commonly to the Egyptian population [ Time Frame: 12 months after the start of the recruitment ]NGS panels of dyslipidemia main genes; (LDLR), (APOB), (PCSK9), and (LDLRAP) will be customized by Illumina to screen for mutations in 30 participants (as detected by OR in relation to controls).
- The most significant predisposing or protective genetic variants out of the studied risk and protective alleles associated with NAFLD without and with fibrosis in the Egyptian population. [ Time Frame: 12 months after the start of the recruitment ]The identification of people who carry a specific genetic variant predisposing them to NAFLD with fibrosis Through gene polymorphisms (as detected by OR in relation to controls)
- The expression level of altered plasma mRNAs detected among the Egyptian population [ Time Frame: 12 months after the start of the recruitment ]Expression profiling of plasma microRNAs expression profiling will be performed by locked nucleic acid PCR array for high plasma miRNAs. This will be applied to 2 subjects from each group (a total of 12 subjects).
- The glycosylation profile of the studied N- and O-glycoproteins among Egyptians [ Time Frame: 12 months after the start of the recruitment ]identifying the glycosylation pattern transferrin, apolipoprotein C III (Apoc III), haptoglobin, Mac2 binding protein, IgG (Santa Cruz, USA). The protein bands were visualized as a chemiluminescence reaction using ECL (Novex, Invitrogen, Thermo Scientific, US), and the images will be taken using a CDD camera.
- Differences in the compositions and types of the bacterial isolates among the Egyptian populations that are linked to NAFLD patients without and with fibrosis vs. controls [ Time Frame: 12 months after the start of the recruitment ](out of 10 bacterial isolates) using -Rapid RT-PCR test for 16S rRNA gene amplicon library preparation and sequencing
- Concentration level of the high salivary detected microbiome-related metabolites [ Time Frame: 12 months after the start of the recruitment ]The salivary concentrations of the high salivary detected microbiome-related metabolites using Gas Chromatography-Mass Spectrometer (GC-MS) Analysis and their predictive value (Odds Ratio)
- Production of a novel non-invasive biomarker panel to be used for NAFLD without and with fibrosis prediction and diagnosis. [ Time Frame: 24 months from the start of the study ]Using a logistic regression prediction model for the identification of significant multi-omics biomarkers will help in the development of a unique Egyptian scoring system.

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Ages Eligible for Study: | 12 Years to 60 Years (Child, Adult) |
Sexes Eligible for Study: | All |
Sampling Method: | Probability Sample |
Inclusion Criteria:
- Age: 30-60 years for adults and 12-18 years for children
- BMI: ≥ 25 for adults, BMI: ≥ 85th and <94th percentile for overweight and ≥95th percentile for obese children
- Pre-diabetics and type 2 diabetes
- Dyslipidemia
- Hypertension
- Family history of NASH
Exclusion Criteria:
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• Alcohol consumption
- Type 1 diabetes
- Other chronic liver diseases
- Malignant diseases

To learn more about this study, you or your doctor may contact the study research staff using the contact information provided by the sponsor.
Please refer to this study by its ClinicalTrials.gov identifier (NCT number): NCT05301231
Contact: Ammal M Metwally, PhD (MD) | +201222280640 | ammal_mok@yahoo.com | |
Contact: Iman H Kamel, PhD (MD) | +201222906160 | imankamelh@gmail.com |
Egypt | |
National Research Centre | |
Giza, Al Jizah, Egypt, 12411 |
Principal Investigator: | Ammal M Metwally | National Research Centre of Egypt |
Responsible Party: | Prof.Dr. Ammal Mokhtar Metwally, Prof. Public Health and Community Medicine, National Research Centre, Egypt |
ClinicalTrials.gov Identifier: | NCT05301231 |
Other Study ID Numbers: |
20211129 |
First Posted: | March 29, 2022 Key Record Dates |
Last Update Posted: | June 3, 2022 |
Last Verified: | June 2022 |
Individual Participant Data (IPD) Sharing Statement: | |
Plan to Share IPD: | Yes |
Plan Description: | All IPD that underlie results in a publication will be shared |
Supporting Materials: |
Study Protocol Clinical Study Report (CSR) |
Time Frame: | After the end of the project implementation |
Access Criteria: | the data will be accessed through a drive with a link |
Studies a U.S. FDA-regulated Drug Product: | No |
Studies a U.S. FDA-regulated Device Product: | No |
non-alcoholic fatty liver disease (NAFLD) non-alcoholic steatohepatitis epi-genomics |
genomics metabolomics proteomics |
Liver Diseases Fatty Liver Non-alcoholic Fatty Liver Disease Digestive System Diseases |