Manipulating the Microbiome in IBD by Antibiotics and FMT (FMT)
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ClinicalTrials.gov Identifier: NCT02033408 |
Recruitment Status :
Completed
First Posted : January 10, 2014
Last Update Posted : October 8, 2021
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the etiology of Inflammatory Bowel Diseases (IBD) is closely associated with the gut microbiome. The results of previous studies on the effectiveness of antibiotics and fecal macrobiota transplantation (FMT) are contradicting.
Aims: to evaluate the effectiveness of wide-spectrum antibiotic regimens in acute severe colitis in an addition to standard corticosteroid therapy (UC and isolated "UC-like" Crohn's colitis). The secondary aim is to assess the outcome of FMT in those not responding to five days of therapy (in either arm). As an exploratory aim, any IBD patient with a resistant disease to at least two immunosuppressive medications, may be treated with either interventions.
Condition or disease | Intervention/treatment | Phase |
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Exacerbation of Ulcerative Colitis Ulcerative Colitis, Active Severe Crohn's Colitis | Drug: AB (antibiotics) Drug: CS (corticosteroids) Only | Not Applicable |
Study Type : | Interventional (Clinical Trial) |
Actual Enrollment : | 28 participants |
Allocation: | Randomized |
Intervention Model: | Parallel Assignment |
Masking: | Single (Investigator) |
Primary Purpose: | Treatment |
Official Title: | Manipulating the Microbiome in IBD by Antibiotics and Fecal Microbiota Transplantation (FMT): a Randomized Controlled Trial |
Study Start Date : | January 2014 |
Actual Primary Completion Date : | December 2018 |
Actual Study Completion Date : | January 2021 |

Arm | Intervention/treatment |
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Experimental: Antibiotics in addition to steroids
methylprednisolone-1.5mg/kg up to 60mg daily in two divided doses and in addition the following antibiotics:
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Drug: AB (antibiotics)
Patients with known allergy to one of the drugs may be treated with oral Gentamycin (2.5mg/KgX3/d) for 3 weeks instead of the allergenic drug. Other Names:
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Active Comparator: Steroids only
methylprednisolone-1.5mg/kg up to 60mg daily in two divided doses
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Drug: CS (corticosteroids) Only
Other Name: Metronidazole-Flagyl® |
Open arm
either the antibiotics and/or FMT (fecal microbiome transplant) may be administered in a non-randomized, uncontrolled open-label arm to any resistant IBD patients
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Drug: AB (antibiotics)
Patients with known allergy to one of the drugs may be treated with oral Gentamycin (2.5mg/KgX3/d) for 3 weeks instead of the allergenic drug. Other Names:
Drug: CS (corticosteroids) Only
Other Name: Metronidazole-Flagyl® |
- Total PUCAI (Pediatric Ulcerative Colitis Activity Index) score [ Time Frame: at day 5 after treatment (compared between the two treatment groups). ]
- Remission rates [ Time Frame: at days 7, separately at discharge, separately at day 14, and separately at 90 days. ]defined by PUCAI<10 without the need for second line therapy (anti TNF (Tumor Necrosis Factor), cyclosporine or tacrolimus) or colectomy.
- Number of patients with PUCAI<35 points [ Time Frame: at day 5 ]without the need for second line therapy (anti TNF, cyclosporine or tacrolimus) or colectomy.
- The need for second line therapy or colectomy by discharge [ Time Frame: by 90 days and at 1 year ]
- Rate of steroid [ Time Frame: dependency at 1 year ]defined as a course longer than 3 month with an unsuccessful attempt to wean steroids or cumulative steroid treatment months of 4 months, during the year.
- Need for subsequent admission [ Time Frame: by 1 year ]
- Calprotectin levels [ Time Frame: at 5 and 14 days after treatment. ]
- Rate of gastrointestinal carriage of resistant organisms (VRE, ESBL) [ Time Frame: at days 5 and 14 after treatment. ]
- Change in microbiome pattern. [ Time Frame: 3 years from baseline ]
- Rate of C. difficile infection [ Time Frame: at days 5 and 14 after treatment. ]

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Ages Eligible for Study: | 2 Years to 75 Years (Child, Adult, Older Adult) |
Sexes Eligible for Study: | All |
Accepts Healthy Volunteers: | No |
Inclusion Criteria:
- Children over the age the 2 years and adults of all ages with established diagnosis of UC using standard criteria (26, 27).
- Admission for IV steroid therapy
- PUCAI of at least 65 points at admission (i.e. severe attack)
- PUCAI>45 at enrollment
- Ability to swallow antibiotics (pills or syrup)
Exclusion Criteria:
- Change in dose or intervals of anti-TNF within the past 2 months prior to admission.
- Disease confined to the rectum (Proctitis).
- Antibiotic use in the past 4 weeks.
- Any known erosive inflammation anywhere in the small bowel or esophagus.
- Any proven infection such as positive stool culture, parasite or C. difficile, urinary tract infection, cellulitis, abscess, pneumonia, line-infections etc.
- Fever >38.5, or >38.0c thought to be unrelated to the inflammatory process of active UC.
- The probable need for second line medical therapy (infliximab, cyclosporine, tacrolimus) or colectomy within 5 days of enrollment, as judged by the caring physician.
- Known allergy to more than one antibiotic regimen from the list below.
- Pregnancy.

To learn more about this study, you or your doctor may contact the study research staff using the contact information provided by the sponsor.
Please refer to this study by its ClinicalTrials.gov identifier (NCT number): NCT02033408
Canada | |
The Hospital for Sick Children (SickKids) | |
Toronto, Canada | |
Finland | |
Hospital for Children and Adolescents Helsinki University Hospital | |
Helsinki, Finland | |
Israel | |
Soroka Medical Center | |
Beer Sheva, Israel | |
Rambam Medical Cener | |
Haifa, Israel | |
Wolfson Medical Center | |
Holon, Israel | |
Shaare Zedek Medical Center | |
Jerusalem, Israel, 9103102 | |
Schneider Medical Center | |
Petach Tikva, Israel | |
Sheba Medical Center | |
Ramat Gan, Israel | |
Italy | |
Università degli Studi di Napoli "Federico II" | |
Napoli, Italy | |
Sapienza University of Rome | |
Rome, Italy | |
Poland | |
Univeristy Children's Hospital in Krakow | |
Krakow, Poland | |
Spain | |
Hospital Regional Universitario Carlos Haya Málaga | |
Malaga, Spain |
Principal Investigator: | Dan Turner, MD | Shaare Zedek Medical Center |
Responsible Party: | Shaare Zedek Medical Center |
ClinicalTrials.gov Identifier: | NCT02033408 |
Other Study ID Numbers: |
ABCS-FMT-01 |
First Posted: | January 10, 2014 Key Record Dates |
Last Update Posted: | October 8, 2021 |
Last Verified: | April 2019 |
IBD: Inflammatory Bowel Diseases CD: Crohn's Disease UC: Ulcerative Colitis ASC: Acute Severe Colitis |
FMT: Fecal Microbiota Transplantation PUCAI: Pediatric Ulcerative Colitis Activity Index Ciprofloxacin, Doxycycline, Gentamycin, amoxicillin, vancomycin, metronidazole,ciprofloxacin |
Inflammatory Bowel Diseases Colitis Colitis, Ulcerative Ulcer Gastroenteritis Gastrointestinal Diseases Digestive System Diseases Colonic Diseases Intestinal Diseases Pathologic Processes Anti-Bacterial Agents Amoxicillin Metronidazole Vancomycin Doxycycline |
Ciprofloxacin Gentamicins Anti-Infective Agents Antiprotozoal Agents Antiparasitic Agents Antimalarials Topoisomerase II Inhibitors Topoisomerase Inhibitors Enzyme Inhibitors Molecular Mechanisms of Pharmacological Action Antineoplastic Agents Cytochrome P-450 CYP1A2 Inhibitors Cytochrome P-450 Enzyme Inhibitors Protein Synthesis Inhibitors |